PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10032208
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 359aa    MW: 41169.9 Da    PI: 9.7681
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10032208genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00068110133123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  y C  Cg++F +++ +++H r  H
  Lus10032208 110 YLCRVCGRRFYNNEKMMNHFRQiH 133
                  56*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.5E-630109IPR029060PIN domain-like
SuperFamilySSF576679.21E-5109135No hitNo description
PROSITE profilePS5015711.926110138IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.8E-4110134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280112133IPR007087Zinc finger, C2H2
CDDcd061671.45E-11127264No hitNo description
PfamPF019362.8E-5172267IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10101.5E-6195265IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MRYISQLKPQ NQLLNFFRFR RVSTESQPPL PRVAIFWDLD NKPPNSTPPF EAALKLKRAA  60
SSFGIVKYTV AYANRHAFSH VPLPVRQQRN GREQLNQLEN KGLIKPLEPY LCRVCGRRFY  120
NNEKMMNHFR QIHERENQKR VNQIESARGK RRVNLVGKFA MKMQKYKNAS REVLTPKVGY  180
GLADELRRAG FWVGEVSSKP EAADVALKER MVDVMDKRKA EYLVLVSDDS GFLGVLKEAK  240
SRCLKTVVVG NMMEEGAKLK RVADAGFSWQ EVLMGKAKKE GASVVEKWSD RDVLERLEWR  300
FDPEKEKSAY AAVNQFYSCN ADADHEGFDD DGYFDGDGVD VVKKEDSGSW WELDSESR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015571651.11e-166PREDICTED: uncharacterized protein LOC8272138
TrEMBLB9RBR61e-166B9RBR6_RICCO; Nucleic acid binding protein, putative
STRINGPOPTR_0003s11420.11e-158(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75002533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-137C2H2 family protein